By Paolo Bottoni, Anna Labella, Florin Manea (auth.), Russell Deaton, Akira Suyama (eds.)
This e-book constitutes the completely refereed post-conference complaints of the fifteenth overseas assembly on DNA Computing, DNA15, held in Fayetteville, AR, united states, in June 2009.
The sixteen revised complete papers provided have been conscientiously chosen in the course of rounds of reviewing and development from 38 submissions. The papers function present interdisciplinary study in molecular-scale manipulation of topic - specifically, implementation of nanoscale computation and programmed meeting of fabrics are of curiosity, hence reflecting a broader scope past DNA-based nanotechnology and computation.
Read Online or Download DNA Computing and Molecular Programming: 15th International Conference, DNA 15, Fayetteville, AR, USA, June 8-11, 2009, Revised Selected Papers PDF
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Additional info for DNA Computing and Molecular Programming: 15th International Conference, DNA 15, Fayetteville, AR, USA, June 8-11, 2009, Revised Selected Papers
Sample text
We hope to leverage the lessons learned 34 D. J. Patitz from designing the aTAM DSL to guide the design of more advanced DSLs for high-level programming in these alternative models. Acknowledgements. We thank Scott Summers for help testing and using preliminary versions of the DSL and for helpful comments on this paper. References 1. : Pictures worth a thousand tiles, a geometrical programming language for self-assembly. Theoretical Computer Science (to appear) 2. : On the size of machines. Information and Control 11(3), 257–265 (1967) 3.
However, even writing a program to produce tile types directly is error-prone, and more low-level than the ways that we tend to think about tile assembly systems. Fowler [4] suggests that a domain-specific language (DSL) is an appropriate tool to introduce into a programming project when the syntax or expressive capabilities of a general-purpose programming language are awkward or inadequate for certain portions of the project. g. Ruby on Rails for writing web applications). An external DSL may be as simple as an XML configuration file, and an internal DSL may be as simple as a class library.
Signal. A signal is simply the name of a variable and the set of allowable values for it. For example, a signal used to represent a binary digit could be defined by giving it the name bit and the allowable values 0 and 1. Transition. Transitions are the objects which provide the computational abilities of tile templates. A transition is defined as a set of input signal names, output signal names, and a function which operates on the input signals to yield output signals. The logic of a function can be specified as a table enumerating all input signals and their corresponding outputs, a Python expression, or a Python function, yielding the full power of a general purpose programming language for performing the computations.
